Dr. Atakan Ekiz
Dr. Atakan Ekiz
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technical
Useful YAML options for generating HTML reports in R
A few neat tricks to make Rmarkdown reports more readable
Last updated on Jan 15, 2022
technical
Annotating unknown clusters in scRNAseq data using CIPR: A cross-species reference comparison
We have recently published a Shiny (R) app called Cluster Identity Predictor (CIPR) in BMC Bioinformatics that helps annotate unknown clusters in single cell RNAseq (scRNAseq) datasets. CIPR does its thing by comparing the gene expression signatures of unknown clusters against signatures from known cell types.
Last updated on Jan 15, 2022
technical
Programmatically create new headings and outputs in Rmarkdown
Even though I do this fairly often, I keep forgeting its recipe. I might as well write it down and save time for my future self and others like me.
Last updated on Jan 15, 2022
technical
Understanding Lasso and Ridge Regression
To understand how these algorithms work, let’s make up a toy data frame about shark attacks. Imagine that we are trying to find out the factors that are associated with the number of shark attacks at a given location.
Last updated on Mar 26, 2022
technical
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